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Test Code KITQ KIT p.Asp816Val Variant Analysis, Quantitative, Varies


Shipping Instructions


Whole blood or bone marrow specimens must arrive within 14 days of collection.



Necessary Information


Specimen type is required to perform testing.



Specimen Required


Submit only 1 of the following specimens:

 

Specimen Type: Whole blood

Container/Tube:

Preferred: Lavender top (EDTA)

Acceptable: Yellow top (ACD)

Specimen Volume: 3 mL

Collection Instructions:

1. Invert several times to mix.

2. Send specimen in original tube. Do not aliquot.

3. Label specimen as blood.

Specimen Stability Information: Ambient (preferred) 14 days/Refrigerate 14 days

 

Specimen Type: Bone marrow aspirate

Container/Tube:

Preferred: Lavender top (EDTA)

Acceptable: Yellow top (ACD)

Specimen Volume: 3 mL

Collection Instructions:

1. Invert several times to mix.

2. Send specimen in original tube. Do not aliquot.

3. Label specimen as bone marrow.

Specimen Stability Information: Ambient (preferred) 14 days/Refrigerate 14 days

 

Specimen Type: Extracted DNA

Container/Tube: 1.5- to 2-mL tube

Specimen Volume: Entire specimen

Collection Instructions:

1. Label specimen as extracted DNA

2. Provide indication of volume of DNA.

Specimen Stability Information: Frozen (preferred)/ Refrigerate/Ambient

Additional Information: We cannot guarantee that all extraction methods are compatible with this test. If testing fails, one repeat will be attempted, and if unsuccessful, the test will be reported as failed, and a charge will be applied.

 

Specimen Type: Paraffin-embedded bone marrow aspirate clot

Container/Tube: Paraffin block

Specimen Stability Information: Ambient

 

Specimen Type: Tissue (FFPE)

Container/Tube: Paraffin block

Collection Instructions: Submit a formalin-fixed, paraffin-embedded tissue block.

Specimen Stability Information: Ambient

Additional Information: Decalcified core biopsies are not accepted.


Secondary ID

620901

Useful For

Diagnosing systemic mastocytosis

Genetics Test Information

This test uses droplet digital polymerase chain reaction to detect the KIT NM_000222.3:c.2447A>T(p.Asp816Val) variant.

Method Name

Droplet Digital Polymerase Chain Reaction (ddPCR)

Reporting Name

KIT D816V Variant Analysis Quant, V

Specimen Type

Varies

Specimen Minimum Volume

Blood, bone marrow: 1 mL; Extracted DNA: 50 mcL at 10 ng/mcL concentration; Paraffin block: 1 block

Specimen Stability Information

Specimen Type Temperature Time Special Container
Varies Varies

Reject Due To

Gross hemolysis Reject
Gross lipemia OK
Gross icterus Reject
Moderately to severely clotted Bone marrow core biopsies (decalcified embedded) Slides Paraffin shavings Reject

Clinical Information

Systemic mastocytosis (SM) is a hematopoietic neoplasm that is now recognized as a distinct entity in the current World Health Organization and International Consensus Classifications. SM is characterized by a proliferation of neoplastic mast cells in the bone marrow and rarely in extramedullary sites. SM may present with variable degrees of clinical severity and can sometimes be associated with a non-mast cell hematologic neoplasm. SM is diagnosed using a combination of major and minor criteria, encompassing morphologic, biochemical and molecular genetic features. An important minor criterion is the presence of an activating somatic mutation in the KIT gene, encoding the tyrosine kinase receptor for stem cell factor, which is a critical growth factor in early myeloid cell proliferation and development. In SM, the most common KIT alteration is a missense change in exon 17 at codon 816, p.Asp816Val (D816V). Much less frequently, other missense mutations involving the D816 codon or adjacent amino acids are encountered and rarely, KIT genetic alterations can occur in other exons. A subset of acute myeloid leukemias (AML) with core-binding factor gene fusions can also acquire activating KIT gene mutations, including D816V in many cases. Detection of KIT D816V is critical to help establish a diagnosis of SM and is optimally determined by molecular testing. Because mast cell lesions are typically sparse and fibrotic in bone marrow and circulating tumor mast cells are in low abundance, highly sensitive and specific assays are required for optimal detection of KIT D816V. This can be achieved using quantitative allele-specific polymerase chain reaction (PCR) or droplet digital PCR (ddPCR) methods. The presence of KIT D816V mutation in the appropriate clinical and pathologic context is highly supportive of SM. In addition, although the D816V in SM is insensitive to targeted therapy with imatinib, other tyrosine kinase inhibitors such as avapritinib have demonstrated significant therapeutic efficacy in advanced SM, indicating that this mutation may also be a theranostic marker for these patients.

Reference Values

An interpretive report will be provided indicating the status as positive or negative for KIT p.Asp816Val (D816V).

KIT gene (NCBI accession NM_000222.3)

Interpretation

The test will be interpreted as positive or negative for KIT p.Asp816Val and a quantitative result will be included if positive.

Day(s) Performed

Monday through Friday

Report Available

4 to 7 days

Specimen Retention Time

Whole blood/Bone marrow: 2 weeks; Extracted DNA: 3 Months; Paraffin blocks: Unused portions of blocks will be returned 1 week after testing is complete

Performing Laboratory

Mayo Clinic Laboratories in Rochester

Test Classification

This test was developed and its performance characteristics determined by Mayo Clinic in a manner consistent with CLIA requirements. It has not been cleared or approved by the US Food and Drug Administration.

CPT Code Information

81273

LOINC Code Information

Test ID Test Order Name Order LOINC Value
KITQ KIT D816V Variant Analysis Quant, V 55201-8

 

Result ID Test Result Name Result LOINC Value
MP089 Specimen Type 31208-2
622375 Interpretation 69047-9
622376 Signing Pathologist 19139-5